Hardware

 

   
The Bioinformatics Center maintains an Apple G5 cluster consisting of 32 Xserve G5 nodes (64 CPU's), 2 Xsan-controlled Apple Xserve RAIDs, a 3000VA UPS, a high-speed Fibre Channel switch, and two 1 GB network switches.
   
  • Each node contains dual 2.3GHz PowerPC G5 CPUs
  • Each node has 8 GB of memory
  • There is a head node and secondary controller and they are connected via a high-speed Fibre Channel to the 2 Xserve RAID.
  • Xserve RAID
  • There are two fully configured Xserve RAID which are seen in the bottom of the image.
  • Each Xserve RAID has 14 hot-swappable Apple 500 GB Drive Modules
  • There is 14 terabytes of disk space.
  • The Xserve RAIDs are configurated and managed using Apple Xsan software.
  • The Apple Xserve G5 cluster configuration, includes over 170 open source bioinformatics applications, like BLAST, mpiBLAST and HMMER provided by the BioTeam's iNquiry.
  • The Sun Grid Engine is used to manage and schedule tasks among the nodes.
  • The cluster activity is monitered with Apple's System Admin tools, Sun Grid tools, and Ganglia.
  • CBC is housed in an APC 47U rack mount system as show in the accompanying image
  • A total of 110 amp capacity of power is provided and the power is distributed as one 30 amp and three 20 amp dedicated circuits
  • The UPS provides uninterrupted stable power to the head node and secondary controller, Xserve RAIDs, and network switches
  • Heat considerations
  •           Under maximum load it produces approx. 30,380 BTUs
  •           Under minimal loads it produces approx. 20,429 BTUs
  • This resource is available to the CSU community.
   

   
The Center also manages an HP Proliant DL320 G5 server.
   

The server specifications include:

 

  • Dual-core Intel Pentium D processors
  • 8 GB RAM
  • 250 GB disk storage

The HP server hosts an Oracle 10g bioinformatics database.


   

© Copyright 2008, Colorado State University
Fort Collins, Colorado 80523
Maintained by Richard Casey